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snp-sites

Finds SNP sites from a multi-FASTA alignment file

How to download and setup snp-sites

Open terminal and run command
git clone https://github.com/sanger-pathogens/snp-sites.git
git clone is used to create a copy or clone of snp-sites repositories. You pass git clone a repository URL.
it supports a few different network protocols and corresponding URL formats.

Also you may download zip file with snp-sites https://github.com/sanger-pathogens/snp-sites/archive/master.zip

Or simply clone snp-sites with SSH
[email protected]:sanger-pathogens/snp-sites.git

If you have some problems with snp-sites

You may open issue on snp-sites support forum (system) here: https://github.com/sanger-pathogens/snp-sites/issues

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