Most popular bioinformatics repositories and open source projects

qmflows

This library tackles the construction and efficient execution of compu...

8   43   43  

epitopepredict

Python package and command line tool for epitope prediction

21   43   43  

VAPiD

VAPiD: Viral Annotation and Identification Pipeline

13   43   43  

RATTLE

Reference-free reconstruction and error correction of transcriptomes f...

8   43   43  

MetaCHIP

Horizontal gene transfer (HGT) identification pipeline

13   43   43  

rust-lapper

Rust implementation of a fast, easy, interval tree library nim-lapper

5   43   43  

variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow

45   43   43  

colord

A versatile compressor of third generation sequencing reads.

10   43   43  

peptides.py

Physicochemical properties, indices and descriptors for amino-acid seq...

9   43   43  

SNPsplit

Allele-specific alignment sorting

19   43   43  

mmtf

The specification of the MMTF format for biological structures

17   42   42  

bio_tools

Useful bioinformatic scripts

53   42   42  

mrna_vaccine_badge

A small badge showing a schematic of an mRNA vaccine nanoparticle and...

9   42   42  

pyobo

πŸ“› A Python package for using ontologies, terminologies, and biomedical...

10   42   42  

miniwfa

A reimplementation of the WaveFront Alignment algorithm at low memory

4   42   42  

omicverse

A python library for multi omics included bulk and single cell RNA-seq...

11   42   42  

minimap2-rs

Rust bindings to minimap2 library

9   42   42  

career

Бписок вакансий Π² Π”Π΅ΠΏΠ°Ρ€Ρ‚Π°ΠΌΠ΅Π½Ρ‚Π΅ Π’Ρ‹Ρ‡ΠΈΡΠ»ΠΈΡ‚Π΅Π»ΡŒΠ½ΠΎΠΉ Π‘ΠΈΠΎΠ»ΠΎΠ³ΠΈΠΈ Π² ΠΊΠΎΠΌΠΏΠ°Π½ΠΈΠΈ BIOC...

8   41   41  

AIML-in-Medicine-club

Repository for "AI/MD in Medicine" club in clubhouse

8   41   41  

StratiPy

Graph regularized nonnegative matrix factorization (GNMF) in Python

20   41   41  

MA

The Modular Aligner and The Modular SV Caller

2   41   41  

etrf

Exact Tandem Repeat Finder (not a TRF replacement)

2   41   41  

genevalidator

GeneValidator: Identify problems with predicted genes

17   41   41  

migec

A RepSeq processing swiss-knife

21   41   41  

MetaSRA-pipeline

MetaSRA: normalized sample-specific metadata for the Sequence Read Arc...

14   41   41  

covid19

🦠 Regularly updated list of publicly available datasets with single-ce...

4   41   41  

sv-pipeline

Pipeline for structural variation detection in cohorts

19   41   41  

genepattern-notebook

Platform for integrating genomic analysis with Jupyter Notebooks.

12   41   41  

sparqlprog

logic programming with SPARQL

7   41   41  

phigaro

Phigaro is a scalable command-line tool for predicting phages and prop...

16   41   41  

swan_vis

A Python library to visualize and analyze long-read transcriptomes

7   41   41  

RiboCode

release version

14   41   41  

transanno

accurate LiftOver tool for new genome assemblies

6   41   41  

jgi-query

A simple command-line tool to download data from Joint Genome Institut...

16   41   41  

awesome-bioinformatics

A curated list of awesome Bioinformatics databases, softwares, librari...

10   41   41  

Metabuli

Metabuli: specific and sensitive metagenomic classification via joint...

7   41   41  

picardmetrics

:vertical_traffic_light: Run Picard on BAM files and collate 90 metric...

7   40   40  

bigly

a pileup library that embraces the huge

5   40   40  

cytometry-clustering-comparison

R scripts to reproduce analyses in our paper comparing clustering meth...

14   40   40  

pipeliner

A flexible Nextflow-based framework for the definition of sequencing d...

14   40   40  

bac-genomics-scripts

Collection of scripts for bacterial genomics

32   40   40  

shinyChromosome

an R/Shiny application for interactive creation of non-circular plots...

9   40   40  

kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output...

15   40   40  

redbiom

Sample search by metadata and features

18   40   40  

vrs-python

GA4GH Variation Representation Python Implementation

21   40   40  

aldy

Allelic decomposition and exact genotyping of highly polymorphic and s...

18   40   40  

cell2cell

User-friendly tool to infer cell-cell interactions and communication f...

10   40   40  

dnaPipeTE

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable...

10   40   40  

TwoPaCo

A fast constructor of the compressed de Bruijn graph from many genomes

10   39   39  

tomahawk

Fast calculations of linkage-disequilibrium in large-scale human cohor...

9   39   39