bioinformatics

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

Rapid Profiling and Deconvolution Tool for Metagenomes

nucleosome calling using ATAC-seq

MCP server for 200M+ patents, scientific literature, chemistry and pharma records. Search prior art and R&D intelligence powered by PatSnap's propriet...

A Low-cost Open-source High-speed Multi-camera Motion Capture System.

DashTools - Plotly Dash Command Line Tools - Create, Run and Deploy Templated Python Apps from Terminal

Rust bindings to minimap2 library

Python 3 library with good support for both reading and writing VCF

ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling

GNU-Make-like utility for managing builds and complex workflows

modular & open DIA search

Sequence Indexing and Search

my solutions to problems from Rosalind.

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

Fast hash function for DNA/RNA sequences

Config files used to define parameters specific to compute environments at different Institutions

This is the repo of the medical dialogue dataset 'imcs21' in CBLUE@Tianchi

De novo assembly based variant calling pipeline for Illumina short reads

A hybrid assembly and MAG recovery pipeline (and more!)

Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.

Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Simple FASTQ quality assessment using Python

☁️Haven GRC - easier governance, risk, and compliance 👨‍⚕️👮‍♀️🦸‍♀️🕵️‍♀️👩‍🔬

Quantum Mechanical Bespoke Force Field Derivation Toolkit

trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length seq...

DeepMicrobes: taxonomic classification for metagenomics with deep learning

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Code to compute the XP-CLR statistic to infer natural selection

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.

WtP: Phage identification via nextflow and docker or singularity

bioinformatics toolkit in rust

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), t...

We would like to maintain a list of resources which aim to solve molecular docking and other closely related tasks.

BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins

Split k-mer analysis – version 2

A Julia package to read, write and manipulate macromolecular structures

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

Searching for structural similarities across billions of molecules in milliseconds

Pure-python implementation of UCSC liftOver genome coordinate conversion

Python programs for processing GFF3 files

Grep for FASTQ files

An interactive web tool for quality control of DNA sequencing data

Aim to be the bioinformatics repository with more and newer packages https://doi.org/10.1093/bioinformatics/btaf106

Biopython Jupyter Notebook tutorial to characterize a small genome

The Ontology for Biomedical Investigations

📚书：R语言零基础入门