Most popular bioinformatics repositories and open source projects

SmartPeak

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

13   33   33  

PopDel

Population-wide Deletion Calling

2   33   33  

DeepMosaic

DeepMosaic is a deep-learning-based mosaic single nucleotide classific...

3   33   33  

ANIclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

6   33   33  

klib.nim

Experimental getopt, gzip reader, FASTA/Q parser and interval queries...

1   32   32  

peppy

Project metadata manager for PEPs in Python

12   32   32  

MindTheGap

MindTheGap is a SV caller for short read sequencing data dedicated to...

9   32   32  

bio-dockers

:whale: Bio-dockers: dockerized bioinformatic tools

9   32   32  

nf-hack17-tutorial

Nextflow basic tutorial for newbie users

18   32   32  

Afternotes

Afternotes for the attended courses at Ca' Foscari University, master...

4   32   32  

crass

The CRISPR assembler

11   32   32  

my_blog

在 Issues 中建立的个人博客

12   32   32  

hichipper

A preprocessing and QC pipeline for HiChIP data

12   32   32  

CANDO

Computational Analysis of Novel Drug Opportunities

8   32   32  

slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity

18   32   32  

sscClust

simpler single cell RNAseq data clustering

17   32   32  

biocommons.seqrepo

non-redundant, compressed, journalled, file-based storage for biologic...

31   32   32  

JAMP

JAMP - Just Another Metabarcoding Pipeline

6   32   32  

motifmatchr

Fast motif matching in R

8   32   32  

MeShClust

MeShClust: an intelligent tool for clustering DNA sequences

11   32   32  

sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

22   32   32  

htsget-rs

Rust htsget server

6   32   32  

tiara

tiara – a tool for DNA sequence classification

5   32   32  

pgcgap

The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline

6   32   32  

Cecret

Reference-based consensus creation

18   32   32  

dockerfiles

This repository contains Docker files for the images maintained by the...

11   32   32  

Pattern-Recognition-and-Prediction

本课程带您掌握风靡全球的Python同时，无缝链接机器学习领域的有监督学习之...

9   32   32  

lphash

Fast and compact locality-preserving minimal perfect hashing for k-mer...

1   32   32  

plex

Plex Lab Exchange. Client for running scientific workflows on decentra...

7   32   32  

epic

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

6   31   31  

seuratv3wizard

A web-based interactive (wizard style) application to perform a guided...

14   31   31  

CuteVCF

simple viewer for variant call format using htslib

4   31   31  

tripl

This one weird trick turns JSON documents into semantic graph database...

6   31   31  

go4bio

Golang for Bioinformatics

5   31   31  

gretel

An algorithm for recovering haplotypes from metagenomes

4   31   31  

snpsea

:bar_chart: Identify cell types and pathways affected by genetic risk...

8   31   31  

MetaOmGraph

MetaOmGraph: a workbench for interactive exploratory data analysis of...

13   31   31  

tidysq

tidy processing of biological sequences in R

2   31   31  

rna-seq-snakemake

Snakemake based pipeline for RNA-Seq analysis

11   31   31  

searchgui

Highly adaptable common interface for proteomics search and de novo en...

17   31   31  

vdjmatch

⚙️ Matching T-cell repertoire against a database of TCR antigen specif...

9   31   31  

codon-usage-tables

:bar_chart: Codon usage tables in code-friendly format + Python bindin...

8   31   31  

gnparser

GNparser normalises scientific names and extracts their semantic eleme...

4   31   31  

nPhase

Ploidy agnostic phasing pipeline and algorithm

4   31   31  

covid-19-signal

Files and methodology pertaining to the sequencing and analysis of SAR...

25   31   31  

awesome-phages

A curated list of phage related software and computational resources f...

3   31   31  

peptide-prediction-list

Collects software dedicated to predicting specific properties of pepti...

6   31   31  

ClusterMap

ClusterMap for multi-scale clustering analysis of spatial gene express...

10   31   31  

Perl-for-Bioinformatics

An attempt to help anyone interested in using Perl for Bioinformatics

31   30   30  

hotsub

Command line tool to run batch jobs concurrently with ETL framework on...

5   30   30