Most popular bioinformatics repositories and open source projects

HiCPeaks

A Python implementation for BH-FDR and HiCCUPS

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tailfindr

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RN...

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MEGADOCK

An ultra-high-performance protein-protein docking for heterogeneous su...

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pycontact

Analysis of non-covalent interactions in MD trajectories

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glycowork

Package for processing and analyzing glycans and their role in biology...

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sketchy

Genomic neighbor typing of bacterial pathogens using MinHash :rat:

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monkeypox

Nextstrain build for mpox (monkeypox) virus

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ikarus

Identifying tumor cells at the single-cell level using machine learnin...

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singscore

An R/Bioconductor package that implements a single-sample molecular ph...

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pyMSAviz

MSA(Multiple Sequence Alignment) visualization python package for sequ...

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bioseq-js

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

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taxadb

:hatching_chick: locally query the ncbi taxonomy

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NSGA-II

an implementation of NSGA-II in java

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oliver

An opinionated Cromwell orchestration manager.

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nonpareil

Estimate metagenomic coverage and sequence diversity

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tiptoft

Predict plasmids from uncorrected long read data

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PDV

PDV: an integrative proteomics data viewer

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pygtftk

A python package and a set of shell commands to handle GTF files

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UniqueKMER

Generate unique KMERs for every contig in a FASTA file

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Wochenende

Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Gen...

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gwas2vcf

Convert GWAS summary statistics to VCF

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charcoal

Remove contaminated contigs from genomes using k-mers and taxonomies.

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NGS

Next-Gen Sequencing tools from the Horvath Lab

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funcscan

(Meta-)genome screening for functional and natural product gene sequen...

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wdlRunR

Elastic, reproducible, and reusable genomic data science tools from R...

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andi

♥ Efficient Estimation of Evolutionary Distances

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pretzel

Javascript full-stack framework for Big Data visualisation and analysi...

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GeneticVariation.jl

Datastructures and algorithms for working with genetic variation

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psamm

Curation and analysis of metabolic models

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gnfinder

GNfinder finds scientific names in UTF8 texts, PDF files, MS Word/Exce...

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grupo-estudo-bioinformatica

Repositório do grupo de estudo de Bioinformática da rede de comunidade...

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elastic-blast

ElasticBLAST is a cloud-based tool to perform your BLAST searches fast...

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Skyhawk

An Artificial Neural Network-based discriminator for validating clinic...

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crimson

Bioinformatics tool outputs converter to JSON or YAML

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sbgnviz.js

A web based visualization tool for process description maps in SBGN

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2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

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adVNTR

A tool for genotyping Variable Number Tandem Repeats (VNTR) from seque...

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partig

An experimental tool to estimate the similarity between all pairs of c...

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BioPosDep

Tokenization, sentence segmentation, POS tagging and dependency parsin...

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ctdna-pipeline

A simplified pipeline for ctDNA sequencing data analysis

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DCC

DCC uses output from the STAR read mapper to systematically detect bac...

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sevenbridges-r

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

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homologene

:mouse: :left_right_arrow: :couple: An r package that works as a wra...

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crystals

Data structures, algorithms, and parsing for crystallography

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gor

GORpipe is a tool based on a genomic ordered relational architecture a...

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ReductionWrappers

R wrappers to connect Python dimensional reduction tools and single ce...

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metage2metabo

From annotated genomes to metabolic screening in large scale microbiot...

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RNA-Playground

Visualize the inner workings of RNA bioinformatics algorithms for stru...

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conda-env-builder

Build and maintain multiple custom conda environments all in one place...

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BiFusion

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