Topic

bioinformatics

Repositories (1466)

streamformatics
streamformatics mbhall88 JavaScript

Real-time species-typing visualisation for nanopore data.

13
Sequence-database-curator
Sequence-database-curator Eslam-Samir-Ragab Python

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

13
positive-selection
positive-selection robinvanderlee Perl

Scripts and procedures for detecting positively selected genes and codons in primates

13
tangram
tangram insilichem Shell

:black_square_button::atom_symbol: A collection of molecular modelling tools for UCSF Chimera

13
g3lollipop.js
g3lollipop.js G3viz JavaScript

Lollipop-diagram to visualize genomic mutations

13
HaMMLET
HaMMLET wiedenhoeft C++

Fast Bayesian Hidden Markov Model with Wavelet Compression

13
pytaxonkit
pytaxonkit bioforensics Python

Python bindings for the TaxonKit library

13
container_recipes
container_recipes mbhall88 Dockerfile

Repository with all my container recipes 👩‍🍳

13
pubmed2doc
pubmed2doc nalomran Python

Write PubMed search results with two display options (citation or listview) to PDF or Word

13
uncurl_python
uncurl_python yjzhang Jupyter Notebook

UNCURL is a tool for single cell RNA-seq data analysis.

13
rumi
rumi sstadick Rust

Rust UMI Directional Adjacency Deduplicator

13
MultiQC_TestData
MultiQC_TestData ewels HTML

Test data for MultiQC. See https://github.com/ewels/MultiQC

13
biobtree
biobtree tamerh Go

A bioinformatics tool to search/map identifiers, attiributes and keywords

12
dekupl
dekupl Transipedia

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

12
watchdog
watchdog klugem Java

Workflow management system for the automated and distributed analysis of large-scale experimental data.

12
dolphinnext
dolphinnext UMMS-Biocore PHP

A graphical user interface for distributed data processing of high throughput genomics

8