bioinformatics
Repositories (1438)
Plant Disease Identification Using Convulutional Neural Network
Syntax highlighting for computational biology
Multiple Protein Structure Alignment at Scale with FoldMason
A powerful open source data warehouse system
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
:pencil2: A versatile DNA sequence optimizer
Robs manual for the computational genomics and bioinformatics class.
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
An ultrafast memory-efficient short read aligner
UGENE is free open-source cross-platform bioinformatics software
Python package to perform enrichment analysis from omics data.
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
WebAssembly modules for genomics
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downlo...
Python for Bioinformatics
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of t...
UCSC Genome Browser source. "beta" is released version / "master" is testing.
Randomly subsample sequencing reads or alignments
A Python frontend to (Open Biomedical) Ontologies.
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial com...
Deep learning infrastructure for genomics
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
Tutorial for scRNA-seq data analysis beginners using R
A tool to circularize genome assemblies
Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Le...
HyPhy: Hypothesis testing using Phylogenies
Cuneiform distributed programming language
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms...
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
Tools for manipulating sequence graphs in the GFA and rGFA formats
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
Next generation sequencing reads de novo assembler.
A curated list of resources for machine learning for small-molecule drug discovery
A genome completeness evaluation tool based on miniprot
📚 Tools and databases for analyzing HLA and VDJ genes.
Official repo of the modular BioExcel version of HADDOCK
A cool place to store your Hi-C
Simple simulation of single-cell RNA sequencing data
Ten Quick Tips for Deep Learning in Biology
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
A collection of scripts and notes related to genomics and bioinformatics
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
:rocket: A sequencing simulator
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Pegasus Workflow Management System - Automate, recover, and debug scientific computations.