bioinformatics
Repositories (1438)
Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers
R/Pharma Conference 2020. Repository for the workshop "Artificial Neural Networks in R with Keras and TensorFlow" by Leon Eyrich Jessen
Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
AWS lambda S3 + rust-htslib: A serverless bioinformatics example
A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.
<<Managing Your Biological Data with Python>> wirtten in Python 3
GMQL - GenoMetric Query Language
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
Rmarkdown / compiled html files for human reprogramming dataset analysis
Functional Analysis of Metagenomes by Likelihood Inference
Rust implmentation of VCF parser
RNAlien - unsupervised RNA family model construction
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
A job submitter for Portable Encapsulated Projects
Analysing Capture Seq Count Data
Microsoft Azure HPC & Big Compute
:chains: Construct a Physical Map from Linked Reads
Package to calculate functional similarity between genes https://biocor.llrs.dev
A comprehensive R package for microbiome analysis.
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
Feature extraction algorithm for genomic data
Real-time species-typing visualisation for nanopore data.
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Scripts and procedures for detecting positively selected genes and codons in primates
:black_square_button::atom_symbol: A collection of molecular modelling tools for UCSF Chimera
Lollipop-diagram to visualize genomic mutations
Fast Bayesian Hidden Markov Model with Wavelet Compression
Python bindings for the TaxonKit library
Repository with all my container recipes 👩🍳
Write PubMed search results with two display options (citation or listview) to PDF or Word
UNCURL is a tool for single cell RNA-seq data analysis.
Rust UMI Directional Adjacency Deduplicator
Test data for MultiQC. See https://github.com/ewels/MultiQC
A bioinformatics tool to search/map identifiers, attiributes and keywords
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Workflow management system for the automated and distributed analysis of large-scale experimental data.
A graphical user interface for distributed data processing of high throughput genomics