bioinformatics
Repositories (1466)
PipeTaxon exposes the ncbi taxonomy database as a REST API.
DEPRECIATED! Please use nf-core/tools instead
A robust model for quantitative comparison of ChIP-Seq data sets.
Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.
Fast and simple algorithms for computing both LCSk and LCSk+
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
A Python package for fast operations on 1-dimensional genomic signal tracks
Quick access to gene synonyms
Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
♥ Fast and Accurate Estimation of Evolutionary Distances
Immunology Informatics - Big Data Analysis in Immunology - Tutorials
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Chemical Similarity Enrichment analysis of metabolomics datasets
Lag Penalized Weighted Correlation for Time Series Clustering
WebGL Heatmap Viewer for Big Data and Bioinformatics
Tools for producing pseudo-cgh of next-generation sequencing data
CWL for GDC DNASeq workflows
A free (open source), cross-platform tool for spectroscopic data analysis and imaging
Biorepository application for tracking biospecimens.
Repository for support of the IEEE 2791-2020 standard. Please see our home page for communications/publications:
BWT, FM-index and bits vector for analyzing DNA sequence data.
BACTpipe: An assembly and annotation pipeline for bacterial genomics
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Python bindings to UCSC BigWig and BigBed library
User-submitted RNA-seq data analysis tools for BioJupies.
Reference genome quality scores
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a w...
Bio::Phylo - Phyloinformatic analysis using Perl
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
🧭 Navigate single-cell RNA-seq datasets in your web browser.
LAVA: Lightweight Assignment of Variant Alleles
Order and orientation of complete bacterial genomes
Flexible omics pipeline
Phylogenetic trees in Julia
Artisanal 🤣 bioinformatics tools and pipelines in Scala
API for HOMER in R for Genomic Analysis using Tidy Conventions
Syntax highlighting for computational biology
Introduction to the Unix Shell for biologists
Manuscript describing ChronQC is now available online in Bioinformatics
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
use the noise
Fast and accurate prediction of coiled coil domains in protein sequences.
Seven Bridges Python library for programatic generation of CWL workflows.
PHOsphoproteomic dissecTiOn using Networks
A deep learning model to predict anticancer peptides.
one aesthetic way to store musical notes into nucleic acid sequence
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but al...
A python library for advanced lattice light-sheet image analysis