bioinformatics
Repositories (1438)
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
🧭 Navigate single-cell RNA-seq datasets in your web browser.
LAVA: Lightweight Assignment of Variant Alleles
Order and orientation of complete bacterial genomes
Flexible omics pipeline
Phylogenetic trees in Julia
WebGL Heatmap Viewer for Big Data and Bioinformatics
Artisanal 🤣 bioinformatics tools and pipelines in Scala
API for HOMER in R for Genomic Analysis using Tidy Conventions
Syntax highlighting for computational biology
Introduction to the Unix Shell for biologists
Manuscript describing ChronQC is now available online in Bioinformatics
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
use the noise
Fast and accurate prediction of coiled coil domains in protein sequences.
Seven Bridges Python library for programatic generation of CWL workflows.
PHOsphoproteomic dissecTiOn using Networks
A deep learning model to predict anticancer peptides.
one aesthetic way to store musical notes into nucleic acid sequence
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but al...
A python library for advanced lattice light-sheet image analysis
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
♥ Essential Functions for DNA Manipulation
:bar_chart: Gene expression in neuroexpresso database
Deep Learning Based Tumor Type Classification Using Gene Expression Data
UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protein folding with RNN and CNN)
gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both...
Deep learning to solve RNA design puzzles
DOM Text Based Multiple Sequence Alignment Library
Mapping-free software for fishing relevant reads in an RNA-Seq sample
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
parseR: Pipeline for rna-seq analysis in R
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotatio...
Automatically calculate phylogenetic trees from bacterial core genes
Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
🍊🔬 Bioinformatics add-on for Orange3
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Genotyping of segregating mobile elements insertions
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
Streamable FASTA parser.
Webapp for design DNA primers for miRNA qPCR process
Nomie Documentation Repo for docs.nomie.io
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Read HOMER motif analysis output in R.
A suite of unique bioinformatics tools for the brave explorer.
SISTR (Salmonella In Silico Typing Resource) command-line tool
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate...