bioinformatics

SemiBin: metagenomics binning with self-supervised deep learning

nim wrapper for htslib for parsing genomics data files

Detect and visualize target mutations by scanning FastQ files directly

Blazing-Fast Bioinformatic Operations on Python DataFrames

Tools for processing and analyzing structural variants.

WebLogo 3: Sequence Logos redrawn

Single cell analysis in the browser

an R/shiny application for creation of Circos plot interactively

Pathogen NGS Documentary

Bioinformatics library for .NET

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.

A fast multiple sequence alignment program.

📦R包：Make TCGA download and prepare easy!

Tandem repeat expansion detection or genotyping from long-read alignments

🗂️ Git-based TCR database storage & management. Submissions welcome!

Oxbow makes genomic data ready for high-performance analytics.

A curated list of awesome personal genomics software, libraries, and educational resources.

NGLess: NGS with less work

A modular annotation tool for genomic variants

accurate LiftOver tool for new genome assemblies

BSR-Based Allele Calling Algorithm

Per-base per-nucleotide depth analysis

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

Python Programming for Biologists

machine learning for genomic variants

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

A robust and fast clustering method for amplicon-based studies

What should perfect bioinformatic tools be like?

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the...

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

[Deprecated, see README] Post-analysis of immune repertoire sequencing data

Comparing performance-oriented string-processing libraries for substring search, multi-pattern matching, hashing, edit-distances, sketching, and sorti...

dbSNP

Deep Learning-based Clustering Approaches for Bioinformatics

Data visualisation web components for the life sciences.

A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GA...

Global alignment and alignment extension

Global Biotic Interactions provides access to existing species interaction datasets

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

Protein and molecule viewer, editor, simulator

Bam Error Stats Tool (best): analysis of error types in aligned reads.

Analyze your RNA sequencing data without writing a single line of code

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive b...

An efficient FASTQ manipulation suite

A minimalist multi-agent framework for rubost automation of scientific analysis workflows, such as gene expression analysis.

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

GATK RNA-Seq Variant Calling in Nextflow