bioinformatics
Repositories (1466)
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable E...
⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
A Python platform for Structural Bioinformatics
de novo virus assembler of Illumina paired reads
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
A fast tool for detecting and decomposing segmental duplications in genome assemblies
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖...
A minimal desktop app for easy and convenient gene annotation and lookup.
Improve the quality of a denovo assembly by scaffolding and gap filling
Bioinformatics analysis scripts, workflows, general code examples
VAPiD: Viral Annotation and Identification Pipeline
List of IARC bioinformatics pipelines and resources
Awesome list for all things AI, ML and deep learning
Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, .....
Comprehensive Python client for the Uniprot REST API
An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
Democratizing ML in proteomics
DICOM parser for golang
The Ensembl Compara Perl API and SQL schema
Data structures, algorithms, and parsing for crystallography
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Efficient target prediction incorporating accessibility of interaction sites
DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRI...
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R pac...
A curated list of awesome AI and Bioinformatics.
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
Graph-based mapping of long sequences, noisy or HiFi.
High-throughput mapping and domain partitioning of antigen receptor sequences
Interpretation of proteomics identification results
GNparser normalises scientific names and extracts their semantic elements.
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
The Enhanced Database of Interacting Protein Structures for Interface Prediction
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
A community-focused repository dedicated to fostering learning and development in Artificial Intelligence 🚀. This project, created by me, @nath.bioha...
🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Curated list of bioinformatics formats and publications
CLI for interacting with Cromwell servers
This library tackles the construction and efficient execution of computational chemistry workflows
Python package and command line tool for epitope prediction
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
A Python implementation for BH-FDR and HiCCUPS
GNfinder finds scientific names in UTF8 texts, PDF files, MS Word/Excel documents, URLs etc.