bioinformatics
Repositories (1438)
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Natural Language Search and Analysis of High Dimensional Genomic Data
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
Symbolic Generators for Complex Networks
logic programming with SPARQL
Sample search by metadata and features
Streamlining SLAM-seq analysis with ultra-high sensitivity
Contact map analysis for biomolecules; based on MDTraj
Convert GWAS summary statistics to VCF
本课程带您掌握风靡全球的Python同时，无缝链接机器学习领域的有监督学习之分类、回归，无监督学习之聚类分析，零基础入门并实现生物信息学经典项目：DNA剪接位...
An R/Bioconductor package that implements a single-sample molecular phenotyping approach
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
Tool suite for HGVS variant descriptions
Remove human reads from a sequencing run
Transmembrane proteins predicted through Language Model embeddings
CellNavi is a deep learning framework designed to predict genes driving cellular transitions.
충남대학교 김준 연구실 튜토리얼
The Modular Aligner and The Modular SV Caller
Python toolkit for building restartable pipelines
♥ Efficient Estimation of Evolutionary Distances
📊 Graphical User Interface for TCC package
Highly adaptable common interface for proteomics search and de novo engines
Fast motif matching in R
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reduci...
A Rust library providing fully dynamic sets of k-mers with high locality
Workshop on Genomics - Genomics Adventure
BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.
Toolkit for single-cell DNA methylation analysis.
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
Complex structural variant visualization for HiFi sequencing data
Tool for fully-automated inference of species trees from raw genome assemblies
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
10x Genomics Reads Simulator
COVID19 risk planner R-Shiny application
CoGe (Comparative Genomics) Platform
Graph regularized nonnegative matrix factorization (GNMF) in Python
Fast k-mer based tool for multi locus sequence typing (MLST)
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequ...
The Microbiome Interpretable Temporal Rule Engine
Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
Javascript full-stack framework for Big Data visualisation and analysis
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
Federating genomes with love (and synteny derived from functional annotations)
Visualization tool for (meta)genome assembly graphs
ClusterMap for multi-scale clustering analysis of spatial gene expression
Toolkit for structure-based deep learning on RNA.