Most popular bioinformatics repositories and open source projects

Binning_refiner

Improving genome bins through the combination of different binning pro...

4   28   28  

SOAP3-dp

To tackle the exponentially increasing throughput of Next-Generation S...

7   28   28  

plasmidtron

Assembling the cause of phenotypes and genotypes from NGS data

8   28   28  

wiki

SciWiki: Collective KnowledgeBase for Scientific Data and Use

40   28   28  

smallrnaseq

small rna-seq analysis package

16   28   28  

BioQueue

A novel pipeline framework to accelerate bioinformatics analysis

9   28   28  

genepattern-server

The GenePattern Server web application

18   28   28  

prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

3   28   28  

opal

SIMD C/C++ library for massive optimal sequence alignment (local/SW, i...

8   28   28  

miga

MiGA: Microbial Genomes Atlas

8   28   28  

workflUX

An open-source, cloud-ready web application for simplified deployment...

8   28   28  

itolapi

Python API for the Interactive Tree of Life (iTOL)

10   28   28  

Rcpi

Molecular informatics toolkit with a comprehensive integration of bioi...

12   28   28  

protwis

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference d...

68   28   28  

PsPM

A matlab suite for Psycho-Physiological Modelling

9   28   28  

bioinf-commons

Bioinformatics library in Kotlin

3   28   28  

faster

A (very) fast program for getting statistics about a fastq file, the w...

1   28   28  

CNApy

An integrated visual environment for metabolic modeling with common me...

2   28   28  

lantern

Interpretable genotype-phenotype landscape modeling

4   28   28  

molgraph

Graph neural networks for molecular machine learning. Implemented and...

4   28   28  

shapeit5

Segmented HAPlotype Estimation and Imputation Tool

6   28   28  

fqtk

Fast FASTQ sample demultiplexing in Rust.

0   28   28  

proxysnps

:bookmark: Get SNP proxies from the 1000 Genomes Project.

10   27   27  

gff3toembl

Converts Prokka GFF3 files to EMBL files for uploading annotated assem...

13   27   27  

sdust

Symmetric DUST for finding low-complexity regions in DNA sequences

6   27   27  

biotoolbox

Tools for querying and analysis of genomic data

17   27   27  

til

today I learned..

1   27   27  

cgpBigWig

BigWig manpulation tools using libBigWig and htslib

7   27   27  

JAXBD2K-ShortCourse

This repository contains course materials from JAX-BD2K workshop.

4   27   27  

OrthoEvolution

An easy to use and comprehensive python package which aids in the anal...

4   27   27  

elvers

(formerly eelpond) an automated RNA-Seq workflow system

3   27   27  

GCModeller

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in...

11   27   27  

pysces

The official PySCeS project source code repository.

10   27   27  

PhyloProfile

A phylogenetic profile analysis tool

9   27   27  

pygna

A Python package for gene network analysis

5   27   27  

BioSymbols.jl

Nucleic and amino acid primitive types

14   27   27  

DENDRO

Genetic Heterogeneity Profiling by Single Cell RNA Sequencing

6   27   27  

phastaf

Identify phage regions in bacterial genomes for masking purposes

4   27   27  

DMRichR

A R package and executable for the preprocessing, statistical analysis...

16   27   27  

OmicsPLS

R package for High dimensional data analysis and integration with O2PL...

8   27   27  

workshop-RNAseq

Workshop • Analysis of RNA-seq data

14   27   27  

gcv

Federating genomes with love (and synteny derived from functional anno...

12   27   27  

volcano3D

An R package to plot interactive three-way differential expression ana...

6   27   27  

correlationplus

A Python package to calculate, visualize and analyze correlation maps...

7   27   27  

tagore

The script presents a simple way to visualize features on human chromo...

5   27   27  

Bioinformatics-Project

生物信息学项目实践仓库🏆🥇

10   27   27  

circrna

circRNA quantification, differential expression analysis and miRNA tar...

12   27   27  

16GT

Simultaneous detection of SNPs and Indels using a 16-genotype probabil...

7   26   26  

VizBin

Repository of our application for human-augmented binning

14   26   26  

ghost-tree

creating hybrid-gene phylogenetic trees for diversity analyses

18   26   26