bioinformatics
Repositories (1438)
💊 AI Research Assistant for Accelerated Drug Discovery. 🦞
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Claude-Code for Bioinformatics
Information-Theoretic Measures for Revealing Variable Interactions
Collection of commonly used RDP Tools for easy building
Exact Tandem Repeat Finder (not a TRF replacement)
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
an implementation of NSGA-II in java
A simple command-line tool to download data from Joint Genome Institute databases
Close assembly gaps using long-reads at high accuracy.
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
Repository to propose and discuss lineages
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
useful command-line tools written to showcase hts-nim
Parse Illumina sample sheets with Python
My bioinfo toolbox
non-redundant, compressed, journalled, file-based storage for biological sequences
VDJ Clonotyping & Analysis Tools
Precision psychophysiology made easy
Fast and flexible semi-supervised learning for peptide detection in Python
A reimplementation of the WaveFront Alignment algorithm at low memory
Nextstrain build for mpox virus
Identifying tumor cells at the single-cell level using machine learning
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
Minimizer-based assembly scaffolding and mapping using long reads
A comparative genomics workflow using Nextflow, conda, Julia and R
Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural networks, FIOR...
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
A D library for computational biology and bioinformatics
Scripts for miscelleneous bioinformatics tasks
A library to build and execute typed scientific workflows
GeneValidator: Identify problems with predicted genes
Collection of scripts for bacterial genomics
:mouse: :left_right_arrow: :couple: An r package that works as a wrapper to homologene
Generate unique KMERs for every contig in a FASTA file
Ploidy agnostic phasing pipeline and algorithm
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions...
A Python 3 version of the protein descriptor package propy
This repository is the collection point of reference data for the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment...
A server implementation of the htsget protocol for bioinformatics in Rust
Interactive phylogenetic tree viewer/editor
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
A free and collaborative space for Machine Learning 🤖 applied to Biology 🧬
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
SevenBridges Python Api bindings
Classify sequencing reads using MinHash.