bioinformatics
Repositories (1438)
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
A Julia package for single cell and spatial data analysis
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://github.com/pyke...
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
Symmetric DUST for finding low-complexity regions in DNA sequences
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using de...
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
A curated list of awesome Bioinformatics databases, softwares, libraries, toolboxes, pipelines, books, courses, tutorials and more.
Generates images from mmCIF/BCIF files
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
The specification of the MMTF format for biological structures
SciWiki: Collective KnowledgeBase for Scientific Data and Use
A small badge showing a schematic of an mRNA vaccine nanoparticle and blinking the RNA sequence of the Moderna or Pfizer vaccines.
Список вакансий в Департаменте Вычислительной Биологии в компании BIOCAD
Repository for "AI/MD in Medicine" club in clubhouse
A RepSeq processing swiss-knife
My xslt sandbox
Platform for integrating genomic analysis with Jupyter Notebooks.
:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.
a pileup library that embraces the huge
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
an R/Shiny application for interactive creation of non-circular plots of whole genomes
Afternotes for the attended courses at Ca' Foscari University, master in Data Management and Analytics.
A fast constructor of the compressed de Bruijn graph from many genomes
Fast calculations of linkage-disequilibrium in large-scale human cohorts
Fast and Versatile Alignments for Python
Gene Expression Omnibus Analysis with Shiny :microscope:
Examples using Clustergrammer2 to explore high-dimensional datasets.
Benchmarking common tasks on proteins in various languages and packages
Biological Engineering Test Code for Worm Analysis: https://stackoverflow.com/q/37820629/293195
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Eyes on your (genomic) data
Viral infection diagnostics using next-generation sequencing
SINA - Reference based multiple sequence alignment
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Efficiently keep track of changes to genomes
SARS-CoV-2 workflow for nanopore sequence data
TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine
Htmlwidgets binding R commands to the BioCircos.js library
Go / Golang Bioinformatics Library
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
An open-source, cloud-ready web application for simplified deployment of big data workflows.
Genomic neighbor typing of bacterial pathogens using MinHash :rat:
For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml
Bioinformatics tool outputs converter to JSON or YAML
:hatching_chick: locally query the ncbi taxonomy