Most popular bioinformatics repositories and open source projects

netSmooth

netSmooth: A Network smoothing based method for Single Cell RNA-seq im...

6   25   25  

viGEN

viGEN - A bioinformatics pipeline for the exploration of viral RNA in...

14   25   25  

awesome-sequencing-tech-papers

A collection of publications on comparison of high-throughput sequenci...

2   25   25  

deepsea

DeepSEA in TensorFlow

16   25   25  

Grow-IoT

Software packages for smart growing environments.

6   25   25  

DriverPower

DriverPower

4   25   25  

qtip

Qtip: a tandem simulation approach for accurately predicting read alig...

7   24   24  

genomedisco

Software for comparing contact maps from HiC, CaptureC and other 3D ge...

9   24   24  

StackedDAE

Stacked Denoising AutoEncoder based on TensorFlow

13   24   24  

SeqMaker.jl

(No maintenance) Next Generation Sequencing Simulation with SNP, Varia...

10   24   24  

splatter-paper

Data and analysis for the Splatter paper

11   24   24  

sequencework

programs and scripts, mainly python, for analyses related to nucleic o...

5   24   24  

scanPAV

Pipeline to detect PAVs (presence/absence variations) in genome compar...

7   24   24  

hla-polysolver

Fork of the Polysolver project

18   24   24  

CellBench

R package for benchmarking single cell analysis methods

5   23   23  

mummer-idotplot

Generate interactive dotplot from mummer4 output using plotly

4   23   23  

SVCollector

Method to optimally select samples for validation and resequencing

5   23   23  

BioNextflow

A collection of modules and sub-workflows for Nextflow

3   23   23  

Bioinformatics-Algorithms

Important bioinformatics algorithms as well as other useful scripts

15   23   23  

GRAFIMO

GRAph-based Finding of Individual Motif Occurrences

2   23   23  

HIBAG

R package – HLA Genotype Imputation with Attribute Bagging (developmen...

6   23   23  

Protein_Sequence_Classification

A case study on Pfam dataset to classify protein families.

14   23   23  

TestingPackage

A Simple R Package Illustrating Components of an R package: 2019-2022...

6   23   23  

helpful_commands

Command-line tools, commands, and code snippets for performing routine...

12   23   23  

CiteFuse

CiteFuse:

5   23   23  

SNPbinner

SNPbinner is a utility for the generation of genotype crossover points...

16   23   23  

dna-sculpture

3D printed sculpture of a DNA molecule, showing my own genome

0   23   23  

calour

exploratory and interactive microbiome analyses based on heatmaps

22   23   23  

team-rosalind-project

This is the main repository for the HackBio'2020 Virtual Internship Ex...

17   23   23  

calN50

Compute N50/NG50 and auN/auNG

0   23   23  

MetaSUB_CAP

A comprehensive pipeline for short read metagenomic data

10   23   23  

haploclique

Viral quasispecies assembly via maximal clique finding. A method to re...

35   22   22  

GenAMap

Visual Machine Learning of Genome-Phenome Associations

6   22   22  

GEDFN

GEDFN: Graph-Embedded Deep Feedforward Network

16   22   22  

cmdbtools

Command line tools for CMDB varaints browser

7   22   22  

DeepChem-Workshop

DeepChem 2017: Deep Learning & NLP for Computational Chemistry, Biolog...

12   22   22  

lightdock-python2.7

Protein-protein, protein-peptide and protein-DNA docking framework bas...

9   22   22  

mview

MView extracts and reformats the results of a sequence database search...

11   22   22  

varsome-api-client-python

Example client programs for Saphetor's VarSome annotation API

14   22   22  

mlst_check

Multilocus sequence typing by blast using the schemes from PubMLST

16   22   22  

kmer-counter

Count kmers with a more efficient (faster) hash table

6   22   22  

RNA-Science-Toolbox

A platform to do RNA science

9   22   22  

berokka

🍊 💫 Trim, circularise and orient long read bacterial genome assembli...

4   22   22  

ena-cog-uk-wfs

Collection of scripts for automated SARS-CoV-2 genome surveillance.

6   22   22  

pm4ngs

Project Manager for NGS data analysis

8   22   22  

sc2-illumina-pipeline

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

9   22   22  

countminsketch

An implementation of Count-Min Sketch in Golang

4   22   22  

review

:earth_americas: Review materials for bioinformatics, computational bi...

1   22   22  

croissance

Tool for estimating growth rates from microbial growth curves

10   22   22  

MetagenomeScope

Visualization tool for (meta)genome assembly graphs

8   22   22