bioinformatics

A D library for computational biology and bioinformatics

Scripts for miscelleneous bioinformatics tasks

A library to build and execute typed scientific workflows

GeneValidator: Identify problems with predicted genes

Collection of scripts for bacterial genomics

Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)

Natural Language Search and Analysis of High Dimensional Genomic Data

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

Symbolic Generators for Complex Networks

:mouse: :left_right_arrow: :couple: An r package that works as a wrapper to homologene

Sample search by metadata and features

Streamlining SLAM-seq analysis with ultra-high sensitivity

Fast motif matching in R

Generate unique KMERs for every contig in a FASTA file

Convert GWAS summary statistics to VCF

Interactive phylogenetic tree viewer/editor

Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)

SevenBridges Python Api bindings

Classify sequencing reads using MinHash.

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

Python toolkit for building restartable pipelines

Highly adaptable common interface for proteomics search and de novo engines

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

A Python 3 version of the protein descriptor package propy

本课程带您掌握风靡全球的Python同时，无缝链接机器学习领域的有监督学习之分类、回归，无监督学习之聚类分析，零基础入门并实现生物信息学经典项目：DNA剪接位...

Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

The Modular Aligner and The Modular SV Caller

♥ Efficient Estimation of Evolutionary Distances

Javascript full-stack framework for Big Data visualisation and analysis

📊 Graphical User Interface for TCC package

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reduci...

A Rust library providing fully dynamic sets of k-mers with high locality

Workshop on Genomics - Genomics Adventure

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

10x Genomics Reads Simulator

COVID19 risk planner R-Shiny application

CoGe (Comparative Genomics) Platform

Graph regularized nonnegative matrix factorization (GNMF) in Python

Fast k-mer based tool for multi locus sequence typing (MLST)

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequ...

The Microbiome Interpretable Temporal Rule Engine

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

Federating genomes with love (and synteny derived from functional annotations)

ClusterMap for multi-scale clustering analysis of spatial gene expression

A free and collaborative space for Machine Learning 🤖 applied to Biology 🧬