bioinformatics
Repositories (1466)
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
A Python 3 version of the protein descriptor package propy
本课程带您掌握风靡全球的Python同时，无缝链接机器学习领域的有监督学习之分类、回归，无监督学习之聚类分析，零基础入门并实现生物信息学经典项目：DNA剪接位...
Command-line tools, commands, and code snippets for performing routine data processing and bioinformatics tasks.
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intellig...
The Modular Aligner and The Modular SV Caller
♥ Efficient Estimation of Evolutionary Distances
📊 Graphical User Interface for TCC package
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reduci...
A Rust library providing fully dynamic sets of k-mers with high locality
Workshop on Genomics - Genomics Adventure
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
10x Genomics Reads Simulator
COVID19 risk planner R-Shiny application
CoGe (Comparative Genomics) Platform
Graph regularized nonnegative matrix factorization (GNMF) in Python
Fast k-mer based tool for multi locus sequence typing (MLST)
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequ...
The Microbiome Interpretable Temporal Rule Engine
Javascript full-stack framework for Big Data visualisation and analysis
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
Federating genomes with love (and synteny derived from functional annotations)
ClusterMap for multi-scale clustering analysis of spatial gene expression
Toolkit for structure-based deep learning on RNA.
A Julia package for single cell and spatial data analysis
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://github.com/pyke...
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
Symmetric DUST for finding low-complexity regions in DNA sequences
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using de...
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
A curated list of awesome Bioinformatics databases, softwares, libraries, toolboxes, pipelines, books, courses, tutorials and more.
Generates images from mmCIF/BCIF files
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
SciWiki: Collective KnowledgeBase for Scientific Data and Use
The specification of the MMTF format for biological structures
A small badge showing a schematic of an mRNA vaccine nanoparticle and blinking the RNA sequence of the Moderna or Pfizer vaccines.
Список вакансий в Департаменте Вычислительной Биологии в компании BIOCAD
Repository for "AI/MD in Medicine" club in clubhouse
A RepSeq processing swiss-knife
My xslt sandbox
Platform for integrating genomic analysis with Jupyter Notebooks.
:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.
a pileup library that embraces the huge