Most popular bioinformatics repositories and open source projects

biomehorizon

Plot microbiome time series in parallel

0 22 22

DIPS-Plus

The Enhanced Database of Interacting Protein Structures for Interface...

5 22 22

neofox

Annotation of mutated peptide sequences with published or novel potent...

5 22 22

cshl-singlecell-2017

Single Cell Analysis course at Cold Spring Harbor Laboratory 2017

18 21 21

nn-segmentation-for-lar

Neural networks to segment some type of biomedical images

15 21 21

cwl.go

CWL (and input file) parser for Golang, used by github.com/otiai10/yac...

6 21 21

companion

This repository has been archived, currently maintained version is at...

18 21 21

GenomeAnalysisModule

Welcome to the website and github repository for the Genome Analysis M...

6 21 21

crazydoc

Read DNA sequences from colourful Microsoft Word documents

2 21 21

Scaff10X

Pipeline for scaffolding and breaking a genome assembly using 10x geno...

4 21 21

region-plot

A tool to plot significant regions of GWAS

6 21 21

ngs-preprocess

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacB...

3 21 21

bionitio-python

Demonstrating best practices for bioinformatics command line tools

10 20 20

screenlamp

screenlamp is a Python toolkit for hypothesis-driven virtual screening

11 20 20

course2017

Genomics lessons for week 4 of the Microbial Diversity course at the M...

8 20 20

biomisc_R

command line bioinformatic scripts written in R

1 20 20

manhattan_generator

Manhattan plot Generator

8 20 20

pFind3

7 20 20

cruk-summer-school-2019

Summer School 2019 - Functional Genomics

9 20 20

methrix

An R :package: for fast and flexible DNA methylation analysis

7 20 20

bioportal_web_ui

A Rails application for biological ontologies

16 20 20

ASAP

ASAP : Automated Single-cell Analysis Pipeline

8 20 20

partie

PARTIE is a program to partition sequence read archive (SRA) metagenom...

4 20 20

DISCOVER

DISCOVER co-occurrence and mutual exclusivity analysis for cancer geno...

7 20 20

TreeSAPP

A Python package for gene-centric taxonomic and functional classificat...

3 20 20

ssw_aligner

Python implementation of Striped Smith-Waterman Algorithm

3 20 20

corda

An implementation of genome-scale model reconstruction using Cost Opti...

8 20 20

gdc-workflow-overview

Overview of GDC Harmonization Workflows

6 20 20

RNArtistCore

A Kotlin DSL and library to create and plot RNA 2D structures

4 20 20

SumStatsRehab

GWAS summary statistics files QC tool

3 20 20

guide-counter

Bioinformatics tool for counting guides in CRISPR-screen studies.

3 20 20

bio-ansible

Proof of concept to use ansible + Lmod to deploy a bioinformatics serv...

16 19 19

tachyon

High-level API for storing and querying sequence variant data

3 19 19

galaksio

An easy-to-use way for running Galaxy workflows.

6 19 19

aptasuite

A full-featured bioinformatics software collection for the comprehensi...

10 19 19

mageri

MAGERI - Assemble, align and call variants for targeted genome re-sequ...

6 19 19

biosemble

AI assembly of bioNLP wordnets

3 19 19

bwt

Burrows-Wheeler Transform and FM-index in golang

4 19 19

micca

micca - MICrobial Community Analysis

9 19 19

iCallSV

A Framework to call Structural Variants from NGS based datasets

9 19 19

yacle

Yet Another CWL Engine by Golang

3 19 19

helmsman

highly-efficient & lightweight mutation signature matrix aggregation

4 19 19

metaRNA

Find target sites for the miRNAs in genomic sequences

2 19 19

adversarial-relation-classification

Unsupervised domain adaptation method for relation extraction

8 19 19

g3viz

Lollipop-diagram to interactively visualize genetic mutations

15 19 19

RDML

RDML data import for R

6 19 19

metacherchant

7 19 19

circtools

circtools: a modular, python-based framework for circRNA-related tools...

17 19 19

ResPRE

ResPRE is an algorithm for protein residue-residue contact-map predict...

7 19 19

rustyread

A long read simulator based on badread idea

1 19 19