bioinformatics
Repositories (1466)
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from ric...
Core types and interfaces for BioJulia packages
GATK4 Best Practice Nextflow Pipeline
A pipeline for the computational evaluation of RNA-Seq data
Snakemake profile for running jobs on an LSF cluster
Python package to analyze DNA methylation data
My Self-Study Room: keep tidy and lightweight
Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
:ribbon: A data mining suite for gene expression data.
Single Page Web Application for displaying and studying molecular models
This is the SeqWare Project's main repo.
Improving genome bins through the combination of different binning programs
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to f...
Assembling the cause of phenotypes and genotypes from NGS data
small rna-seq analysis package
today I learned..
A novel pipeline framework to accelerate bioinformatics analysis
The GenePattern Server web application
Accurate, resource-frugal and deterministic DNA sequence classifier.
SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
MiGA: Microbial Genomes Atlas
Python API for the Interactive Tree of Life (iTOL)
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled...
Bioinformatics library in Kotlin
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
Interpretable genotype-phenotype landscape modeling
:bookmark: Get SNP proxies from the 1000 Genomes Project.
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Tools for querying and analysis of genomic data
BigWig manpulation tools using libBigWig and htslib
This repository contains course materials from JAX-BD2K workshop.
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
(formerly eelpond) an automated RNA-Seq workflow system
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
The official PySCeS project source code repository.
A phylogenetic profile analysis tool
A Python package for gene network analysis
Nucleic and amino acid primitive types
Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
ASAP : Automated Single-cell Analysis Pipeline
Identify phage regions in bacterial genomes for masking purposes
R package for High dimensional data analysis and integration with O2PLS!
Workshop • Analysis of RNA-seq data
An R package to plot interactive three-way differential expression analysis
A Python package to calculate, visualize and analyze correlation maps of proteins.
The script presents a simple way to visualize features on human chromosome ideograms
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model