Most popular bioinformatics repositories and open source projects

ChronQC

Manuscript describing ChronQC is now available online in Bioinformatic...

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fadapa

FAstqc DAta PArser - A minimal parser to parse FastQC output data.

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genoiser

use the noise

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DeepCoil

Fast and accurate prediction of coiled coil domains in protein sequenc...

1   16   16  

sevenbridges-cwl

Seven Bridges Python library for programatic generation of CWL workflo...

2   16   16  

photon

PHOsphoproteomic dissecTiOn using Networks

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ACP-DL

A deep learning model to predict anticancer peptides.

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gdsfmt

R Interface to CoreArray Genomic Data Structure (GDS) Files (Developme...

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goldenrecord

one aesthetic way to store musical notes into nucleic acid sequence

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Longbow

Longbow is a tool for automating simulations on a remote HPC machine....

2   16   16  

pyLattice

A python library for advanced lattice light-sheet image analysis

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polyRAD

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌...

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libdna

♥ Essential Functions for DNA Manipulation

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neuroexpresso

:bar_chart: Gene expression in neuroexpresso database

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DL-based-Tumor-Classification

Deep Learning Based Tumor Type Classification Using Gene Expression Da...

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BMI219-2017-ProteinFolding

UCSF BMI219 Deep Learning (2017), Coding example (Prediction of protei...

10   15   15  

gtaxon

gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid,...

2   15   15  

EternaBrain

Deep learning to solve RNA design puzzles

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lexicon-mono-seq

DOM Text Based Multiple Sequence Alignment Library

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shark

Mapping-free software for fishing relevant reads in an RNA-Seq sample

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mapping-iterative-assembler

Consensus calling (or "reference assisted assembly"), chiefly of ancie...

7   15   15  

bio-phylo

Bio::Phylo - Phyloinformatic analysis using Perl

5   15   15  

parseR

parseR: Pipeline for rna-seq analysis in R

4   15   15  

seave

Seave is a web platform that enables genetic variants to be easily fil...

3   15   15  

bcgTree

Automatically calculate phylogenetic trees from bacterial core genes

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CliHelpParser

Reads the output from CLI help commands, and generates machine readabl...

5   15   15  

orange3-bioinformatics

🍊🔬 Bioinformatics add-on for Orange3

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DEcode

A prediction model for differential gene expression (DE) based on geno...

8   15   15  

gpcrdb_data

This repository is the collection point of reference data for the GPCR...

20   15   15  

GslCore

Core library and basic plug-ins for the Amyris Genotype Specification...

9   15   15  

workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud...

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TypeTE

Genotyping of segregating mobile elements insertions

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rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, con...

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bionode-fasta

Streamable FASTA parser.

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miprimer

Webapp for design DNA primers for miRNA qPCR process

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nomie-docs

Nomie Documentation Repo for docs.nomie.io

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chise.js

A web application to visualize and edit the pathway models represented...

5   14   14  

homerkit

Read HOMER motif analysis output in R.

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BLSS

A suite of unique bioinformatics tools for the brave explorer.

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sistr_cmd

SISTR (Salmonella In Silico Typing Resource) command-line tool

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SigProfilerSimulator

SigProfilerSimulator allows realistic simulations of mutational patter...

3   14   14  

srijan-gsoc-2020

Healthcare-Researcher-Connector Package: Federated Learning tool for b...

5   14   14  

RPharma2020

R/Pharma Conference 2020. Repository for the workshop "Artificial Neur...

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TensorFlow-DNNs-for-Predicting-DNA-Transcription-Factor-Binding

Deep neural networks implemented in TensorFlow & Python for predicting...

8   14   14  

Synopsys-Project-2017

A deep learning based bioinformatics project on epigenetics in Type 2...

3   14   14  

Managing_Your_Biological_Data_with_Python_3

<<Managing Your Biological Data with Python>> wirtten in Python 3

5   14   14  

GMQL

GMQL - GenoMetric Query Language

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npdtools

Natural Product Discovery tools -- a toolkit containing various pipeli...

6   14   14  

hrpi

Rmarkdown / compiled html files for human reprogramming dataset analys...

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FAMLI

Functional Analysis of Metagenomes by Likelihood Inference

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