bioinformatics
Repositories (1466)
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Demonstrating best practices for bioinformatics command line tools
screenlamp is a Python toolkit for hypothesis-driven virtual screening
Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
command line bioinformatic scripts written in R
Manhattan plot Generator
Summer School 2019 - Functional Genomics
An R :package: for fast and flexible DNA methylation analysis
A Rails application for biological ontologies
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of t...
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Python implementation of Striped Smith-Waterman Algorithm
R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)
Overview of GDC Harmonization Workflows
A Kotlin DSL and library to create and plot RNA 2D structures
GWAS summary statistics files QC tool
Bioinformatics tool for counting guides in CRISPR-screen studies.
Proof of concept to use ansible + Lmod to deploy a bioinformatics server
High-level API for storing and querying sequence variant data
An easy-to-use way for running Galaxy workflows.
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
AI assembly of bioNLP wordnets
Burrows-Wheeler Transform and FM-index in golang
micca - MICrobial Community Analysis
A Framework to call Structural Variants from NGS based datasets
Yet Another CWL Engine by Golang
highly-efficient & lightweight mutation signature matrix aggregation
Find target sites for the miRNAs in genomic sequences
Unsupervised domain adaptation method for relation extraction
Lollipop-diagram to interactively visualize genetic mutations
RDML data import for R
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
ResPRE is an algorithm for protein residue-residue contact-map prediction
A long read simulator based on badread idea
This repository provides users with a framework to store, search and visualize biological data.
React rerelease of MSAViewer
CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/
A fast, AVX2 accelerated FM index library
A python package for optimizing processing pipelines using statistical design of experiments (DoE).
Mapping-Assisted Targeted-Assembly for Metagenomics
Bioinformatics curated workflows that use Biocontainers tools
myVCF: a web-based platform for target and exome mutations data management
MDMS: Molecular Dynamics Made Simple; Python program facilitating performing Molecular Dynamics simulations of proteins
A pipeline to assess the quantification of transcripts.
Co-Expression Module Identification Tool (CEMiTool) official repository