bioinformatics
Repositories (1438)
Yet Another CWL Engine by Golang
highly-efficient & lightweight mutation signature matrix aggregation
Find target sites for the miRNAs in genomic sequences
Unsupervised domain adaptation method for relation extraction
Lollipop-diagram to interactively visualize genetic mutations
RDML data import for R
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
ResPRE is an algorithm for protein residue-residue contact-map prediction
A long read simulator based on badread idea
This repository provides users with a framework to store, search and visualize biological data.
React rerelease of MSAViewer
CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/
A fast, AVX2 accelerated FM index library
A python package for optimizing processing pipelines using statistical design of experiments (DoE).
Mapping-Assisted Targeted-Assembly for Metagenomics
Bioinformatics curated workflows that use Biocontainers tools
myVCF: a web-based platform for target and exome mutations data management
MDMS: Molecular Dynamics Made Simple; Python program facilitating performing Molecular Dynamics simulations of proteins
A pipeline to assess the quantification of transcripts.
Co-Expression Module Identification Tool (CEMiTool) official repository
PipeTaxon exposes the ncbi taxonomy database as a REST API.
DEPRECIATED! Please use nf-core/tools instead
A robust model for quantitative comparison of ChIP-Seq data sets.
Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.
Fast and simple algorithms for computing both LCSk and LCSk+
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
A Python package for fast operations on 1-dimensional genomic signal tracks
Quick access to gene synonyms
Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
♥ Fast and Accurate Estimation of Evolutionary Distances
Immunology Informatics - Big Data Analysis in Immunology - Tutorials
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Chemical Similarity Enrichment analysis of metabolomics datasets
Lag Penalized Weighted Correlation for Time Series Clustering
Tools for producing pseudo-cgh of next-generation sequencing data
CWL for GDC DNASeq workflows
A free (open source), cross-platform tool for spectroscopic data analysis and imaging
Biorepository application for tracking biospecimens.
Repository for support of the IEEE 2791-2020 standard. Please see our home page for communications/publications:
BWT, FM-index and bits vector for analyzing DNA sequence data.
BACTpipe: An assembly and annotation pipeline for bacterial genomics
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Python bindings to UCSC BigWig and BigBed library
User-submitted RNA-seq data analysis tools for BioJupies.
Reference genome quality scores
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a w...
Bio::Phylo - Phyloinformatic analysis using Perl