bioinformatics
Repositories (1466)
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Build and maintain multiple custom conda environments all in one place.
Population-wide Deletion Calling
Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
Project metadata manager for PEPs in Python
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembl...
:whale: Bio-dockers: dockerized bioinformatic tools
Nextflow basic tutorial for newbie users
The CRISPR assembler
在 Issues 中建立的个人博客
A preprocessing and QC pipeline for HiChIP data
Computational Analysis of Novel Drug Opportunities
simpler single cell RNAseq data clustering
JAMP - Just Another Metabarcoding Pipeline
MeShClust: an intelligent tool for clustering DNA sequences
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
This one weird trick turns JSON documents into semantic graph databases!
Golang for Bioinformatics
An algorithm for recovering haplotypes from metagenomes
:bar_chart: Identify cell types and pathways affected by genetic risk loci.
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
tidy processing of biological sequences in R
Snakemake based pipeline for RNA-Seq analysis
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
R package for benchmarking single cell analysis methods
:bar_chart: Codon usage tables in code-friendly format + Python bindings
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
de novo assembly of RNA-seq data using ABySS
Genome-wide imputation pipeline
Fast & accurate alignment of barcoded short-reads
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
scripts and notes for learning
A lightweight library for working with PAF (Pairwise mApping Format) files
An R framework for phylostratigraphy
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
Super high performance interactive heatmap software
My own tools code for NGS data analysis (Next Generation Sequencing)
A novel management, annotation, and machine learning framework for analyzing cancer mutations
Visualizer of CWL (Common Workflow Language) workflows for Vue
LSTM for binary DNA sequence classification
VirNet: A deep attention model for viral reads identification