Most popular bioinformatics repositories and open source projects

vcf-rs

Rust implmentation of VCF parser

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RNAlien

RNAlien - unsupervised RNA family model construction

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genome_collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Pyth...

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looper

A job submitter for Portable Encapsulated Projects

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s3-rust-htslib-bam

AWS lambda S3 + rust-htslib: A serverless bioinformatics example

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atacr

Analysing Capture Seq Count Data

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wort

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azure-hpc

Microsoft Azure HPC & Big Compute

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physlr

:chains: Construct a Physical Map from Linked Reads

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BioCor

Package to calculate functional similarity between genes https://bioco...

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MicrobiomeR

A comprehensive R package for microbiome analysis.

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libflagstats

Efficient C functions to compute the summary statistics (flagstats) fo...

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gene-oracle

Feature extraction algorithm for genomic data

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streamformatics

Real-time species-typing visualisation for nanopore data.

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Sequence-database-curator

This program dereplicates and/or filter nucleotide and/or protein data...

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positive-selection

Scripts and procedures for detecting positively selected genes and cod...

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tangram

:black_square_button::atom_symbol: A collection of molecular modelling...

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g3lollipop.js

Lollipop-diagram to visualize genomic mutations

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HaMMLET

Fast Bayesian Hidden Markov Model with Wavelet Compression

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pytaxonkit

Python bindings for the TaxonKit library

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container_recipes

Repository with all my container recipes 👩‍🍳

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pubmed2doc

Write PubMed search results with two display options (citation or list...

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uncurl_python

UNCURL is a tool for single cell RNA-seq data analysis.

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rumi

Rust UMI Directional Adjacency Deduplicator

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MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

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hotmap

WebGL Heatmap Viewer for Big Data and Bioinformatics

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biobtree

A bioinformatics tool to search/map identifiers, attiributes and keywo...

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dekupl

Exhaustive capture of biological variation in RNA-seq data through k-m...

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watchdog

Workflow management system for the automated and distributed analysis...

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