bioinformatics
Repositories (1438)
MView extracts and reformats the results of a sequence database search or multiple alignment.
Example client programs for Saphetor's VarSome annotation API
Multilocus sequence typing by blast using the schemes from PubMLST
Count kmers with a more efficient (faster) hash table
A platform to do RNA science
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
Collection of scripts for automated SARS-CoV-2 genome surveillance.
Project Manager for NGS data analysis
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
An implementation of Count-Min Sketch in Golang
:earth_americas: Review materials for bioinformatics, computational biology, and science in general
Tool for estimating growth rates from microbial growth curves
Plot microbiome time series in parallel
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
Single Cell Analysis course at Cold Spring Harbor Laboratory 2017
Neural networks to segment some type of biomedical images
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC M...
Read DNA sequences from colourful Microsoft Word documents
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
A tool to plot significant regions of GWAS
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Demonstrating best practices for bioinformatics command line tools
screenlamp is a Python toolkit for hypothesis-driven virtual screening
Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
command line bioinformatic scripts written in R
Manhattan plot Generator
Summer School 2019 - Functional Genomics
An R :package: for fast and flexible DNA methylation analysis
A Rails application for biological ontologies
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of t...
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Python implementation of Striped Smith-Waterman Algorithm
R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)
Overview of GDC Harmonization Workflows
A Kotlin DSL and library to create and plot RNA 2D structures
GWAS summary statistics files QC tool
Bioinformatics tool for counting guides in CRISPR-screen studies.
Proof of concept to use ansible + Lmod to deploy a bioinformatics server
High-level API for storing and querying sequence variant data
An easy-to-use way for running Galaxy workflows.
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
AI assembly of bioNLP wordnets
Burrows-Wheeler Transform and FM-index in golang
micca - MICrobial Community Analysis
A Framework to call Structural Variants from NGS based datasets